Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYVVIINIVLLKVLMVLTITILSGGFSRERKISLMSGKAVKKALDSLSYNAIEIDVNSNTAEKLKKINPDLAFIALHGPYGEDGCIQGLLEILGIKYTHSGVMASAIAMNKAMSKHIFRSLGIDTPKGYIISRGDI--------LKNNIKIDYPYVLKPINEGSSIGVHITFSHEDYLKLKNMFSVIPVHDAGIEEEEPVWITRDLMIIEEYIPGIELHTAVLLDEAAGTMEIRPKNKFYDYKAKYTNGFAEHIFPAEIPDNIYEMTLEH-ALKVHRFLGCKTISRSDFRYNPKDNTLKMLEINTHPGFTELSLVPEIAKLTKGIDFNELVKIIIEDSLQHKKILEIK |
4C5A Chain:A ((25-327)) | --------------MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAEN---ALQDALRLAFQHD---EE----------VLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGL-EASQEANLQALVLKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAAR-QAGMSFSQLVVRILELAD--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C5A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -132892 for 2560 contacts (-51.9/contact) +
2D Compatibility (PS) -31844 + (NN) -16396 + (LL) 4072
1D Compatibility (HY) -20400 + (ID) 5500
Total energy: -202960.0 ( -79.28 by residue)
QMean score : 0.445
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