Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIHSDSPRQCLEEIIKSASAKFNESIDIAVNLGIDSRKSEEQVRGTVVLPKGIGKDIKVAVFTQGKHLLEAEKAGANIVGGEDLVQEIKKGKKLDVDWCITTPDFIAKI-TPIAKILGAKGLMPNPKFGTMTSNVAEAIKTIKSGQIKFRTDKNGIIHGKLGNIKFSVDDLLKNLKAFLKVIKSNKPISVKGVYFKSVFLNSTMGKAYKMSKVEDII
3U4M Chain:A ((34-226))
------------------ATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGW-MDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS---
General information:
TITO was launched using:
RESULT:
Template:
3U4M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100198 for 1482 contacts (-67.6/contact) +
2D Compatibility (PS) -21098 + (NN) -13704 + (LL) 1632
1D Compatibility (HY) -15200 + (ID) 4050
Total energy: -152618.0 ( -102.98 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_3U4M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U4M-query.scw
PDB file :
Tito_Scwrl_3U4M.pdb
: