Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFVNGGQLKKINQKWLIIGTGLLLFMMMLPSIILLAKMTIGLVMVLVVAIAIKIASKTISNVLEDKQADPNQLTSQTTQSRIINLAVGLVSIFTGGLSLLIIAKTGIAVICAAVVTLAIYEYAKDYK-YAEDKEIGKSINDKLDEIAKNTTNFIVSGIEKLVSPQEQQV
4R83 Chain:A ((343-415))
--------------------------------------------------------------------DKEQLQQQYSQSPLPNFIFTGTTTWAGGETKEYYAQQQVNVINNAINETSPYYLGKDYDLFFKGHPAGGVINDIILGSFPDMINIPAKISFEVLMMTDMLP
General information:
TITO was launched using:
RESULT:
Template:
4R83.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16163 for 378 contacts (-42.8/contact) +
2D Compatibility (PS) -7348 + (NN) 1957 + (LL) 7184
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -17020.0 ( -45.03 by residue)
QMean score : 0.094
(partial model without unconserved sides chains):
PDB file :
Tito_4R83.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R83-query.scw
PDB file :
Tito_Scwrl_4R83.pdb
: