Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYKALITCFIFLVCSFTRSYASDDVHLEKSETELYEEAVELFDQKKYKQAIRAFRKIEDLYPFSYWAMKAKLLSGISHYNMDDYSSAASDMDDYIYIYPNGEDLPYVYYLRVLSY------YMQINRVQLGQQTAYKALELAAEYVNLFSESEYIEEMKEKVRLITDHILKKEYSIGKFYFRRGEYLAAIKRFQNIISS-KDYSYFPRSINYLIAAYSALGLDLEAGQYESLLAENLKENTVEQ
3Q5M Chain:A ((8-220))
---------------------------DNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS--------RDPQHARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS------
General information:
TITO was launched using:
RESULT:
Template:
3Q5M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81615 for 1419 contacts (-57.5/contact) +
2D Compatibility (PS) -21172 + (NN) -11420 + (LL) 4048
1D Compatibility (HY) -11600 + (ID) 2150
Total energy: -123909.0 ( -87.32 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_3Q5M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q5M-query.scw
PDB file :
Tito_Scwrl_3Q5M.pdb
: