Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATKKSGGGSCNGRDSAGCRLGIKKNG--KVIPGNIIVRQRGTKFHPGKNVGMGKDHTIFAKVEGWIRFR-KSVNKKTFIDIVPVDNV
2J28 Chain:W ((1-81))
-AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE---
General information:
TITO was launched using:
RESULT:
Template:
2J28.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 33873 for 472 contacts (71.8/contact) +
2D Compatibility (PS) -8048 + (NN) -1402 + (LL) 452
1D Compatibility (HY) -4800 + (ID) 2250
Total energy: 17825.0 ( 37.76 by residue)
QMean score : 0.256
(partial model without unconserved sides chains):
PDB file :
Tito_2J28.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J28-query.scw
PDB file :
Tito_Scwrl_2J28.pdb
: