Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFGNIKWFNAEKGYGFIKPEANGNDIFVHISTLERSGIRPDSLRGENKEKGIKGERVSYELKEERGRNGEGKKFAINLKLLED
2LSS Chain:A ((7-69))
---GKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGLH--SLE--------EGQDVIFDLEEK-----QGKAYAVNLRIK--
General information:
TITO was launched using:
RESULT:
Template:
2LSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27986 for 427 contacts (-65.5/contact) +
2D Compatibility (PS) -6849 + (NN) -1049 + (LL) 400
1D Compatibility (HY) -7200 + (ID) 1300
Total energy: -43984.0 ( -103.01 by residue)
QMean score : 0.676
(partial model without unconserved sides chains):
PDB file :
Tito_2LSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LSS-query.scw
PDB file :
Tito_Scwrl_2LSS.pdb
: