Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLNLFNNNQVDYSRQNYIILDENKHIYNAVI----NDLSWKYLFLFGPKGSGKTHLAHIWQSINNAI----------------FIN----------VNNFISEIRYS-NAFILEDVQ------DIQDEATLLHCYNYMKENNKRLLITSSTSPKRLNFKLKDLSSRILSTISAKIPSASEELLRIMLIKRFSDKQLKVDLKVINYILARIERSFCSINRIIEKIDNGSMGSNVTIPFVSTLLKRDTT
2Z4R Chain:A ((101-296))
-----------DYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHL---LQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTE--LFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDF
General information:
TITO was launched using:
RESULT:
Template:
2Z4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83057 for 1117 contacts (-74.4/contact) +
2D Compatibility (PS) -17045 + (NN) -8299 + (LL) 1392
1D Compatibility (HY) -10000 + (ID) 2350
Total energy: -119359.0 ( -106.86 by residue)
QMean score : 0.326
(partial model without unconserved sides chains):
PDB file :
Tito_2Z4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Z4R-query.scw
PDB file :
Tito_Scwrl_2Z4R.pdb
: