Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLDKTTKNLLITEINKILPEDSQNRLISAVRYVLLAPAKHIRPFLVVASSQVFNVEIERVISIAMAVECIHTYSLIHDDLPCMDNSDTRRGQLSCHKRFDKATAVLAGDALLTLAFEILSSLNEGSNKRCEIIKA---LSQAIGAKGMVGGQILDIKTALHVIQHHDYLDPESSVINEHTRQLCNKNRTLGSCAKITPDSKIKEIHLMKTAKLFAASCEIGAIIGSATDKQRRALYNYGVNLGLIFQAKDDIRDYKQDEVNNLMSMLSKSEIENYIDNLFKQALDNLGELSGDTNYLYNLLNQVKRDD |
2J1P Chain:A ((28-282)) | -------------LDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDIS-----------LD-LNNVGLEH----------------------LKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTK--KLTYPKLMGLEKSREFAEKLNTEARDQL--LGFDSDKVAPLLALANYIA |
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General information:
TITO was launched using:
| RESULT:
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Template: 2J1P.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -163980 for 2009 contacts (-81.6/contact) +
2D Compatibility (PS) -26072 + (NN) -8888 + (LL) 2904
1D Compatibility (HY) -18000 + (ID) 5000
Total energy: -219036.0 ( -109.03 by residue)
QMean score : 0.482
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