Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLIRIGTRGSSLAIAQALEAKQKLLDLFSSLSVEIIKIKTSGDKYANANLAEIGGKGLFIKEIETELIKSNIDMAVHSLKDVPAFFSKDLTIPCILERLSPYDTFISNKYKSLKSLPQQAIIATSSIRRKVQLLNFRPDLNIVPLRGNVTTR---LQNQSFDGIILAEAGLIRLKKDYLITEVLSPKTMLSAVGQGAICIQCRKNDIKIIDLLEKINNNKSFIRVKSERSFMKTVNGSCFTPLAALAKYV-SENVLHLYCMLADKKNIYFTERTSFVEDAEKMGMDAGLELKSKCL |
| 1PDA Chain:A ((5-294)) | -VLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVI---------GKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGACQVPIGSYAELIDGEIWLRGLVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PDA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -135636 for 2334 contacts (-58.1/contact) +
2D Compatibility (PS) -30298 + (NN) -16031 + (LL) 792
1D Compatibility (HY) -18800 + (ID) 6050
Total energy: -206023.0 ( -88.27 by residue)
QMean score : 0.395
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