Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMLDKENPIIKEFEEAGAILHGHFVLSSGLHSDTYTQCAKIFENPSRAMKVCELLANKIKKEL-NSSIDLILSPAIGGIIVGYEIGRQLRMKTMFCERVNGKFELRRGFE--IKRGEKILLVEDVITTGKSSLEAVKCAEDMGGKVVAEASLIKRNSETKLPFSIISLLELSIKNYSEAELPEELKKLPIIKPGSREYLSNCSK
3QW4 Chain:B ((262-409))
--------LAKALVDSHCVRFGNFTLKSGKSSPIYIDLRRLVTYPA----IMRLVAREYAKVLRHYKFDRIAGLPYAALPIASAISNEMNVPLIYPRRE-------AAIEGEYKKGDRVVIIDDLVST-ETKVEAIEKLRSAGLEVVSIVVLVDRDMGAKAFLNKLGYDFEAVVGLHQLLPLWRKSNAITSQQEADVRAFLGQW
General information:
TITO was launched using:
RESULT:
Template:
3QW4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78186 for 1010 contacts (-77.4/contact) +
2D Compatibility (PS) -14146 + (NN) 944 + (LL) 1132
1D Compatibility (HY) -10800 + (ID) 1500
Total energy: -102556.0 ( -101.54 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_3QW4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QW4-query.scw
PDB file :
Tito_Scwrl_3QW4.pdb
: