Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLRIIAGKYRGRRIATGKHLAARPTMSIVREAVFNILSSKKIIYNLNILDLFCGSGSFSFEALSRGAKHAFIVDLDYYNLQLPEKTAKDLGITD-SITLICCSANALPKPVSKCDIVFIDPPYY--SNLVNSTLDGLANSGWLSDDALIILEVRKN-EDFQCSKNFSVILERTYGIARIIFLSLST
3P9N Chain:A ((2-179))
MTRIIGGVAGGRRIAVPPR-G---TTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTCAPLTWPEGWRRWPQRVYGDTRLELAERL-
General information:
TITO was launched using:
RESULT:
Template:
3P9N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116684 for 1348 contacts (-86.6/contact) +
2D Compatibility (PS) -18283 + (NN) -3819 + (LL) 484
1D Compatibility (HY) -7600 + (ID) 2700
Total energy: -148602.0 ( -110.24 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_3P9N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P9N-query.scw
PDB file :
Tito_Scwrl_3P9N.pdb
: