Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGGYITMETLNSINIPKRKEDSHKGDYGKILLIGGSANLGGAIMLAARACVFSGSGLITVATHPTNHSALHSRCPEAMVIDINDTKMLTKMIEMTDSILIGPGLGVDFKGNNAITFLLQNIQPHQNLIVDGDAITIFSKLKPQL-PTCRVIFTPHLKEWERLSGIPIEEQTYERNREAVDRLGATVVL--KKHGTEIFFKDEDFKLTIGSPAMATGGMGDTLAGMITSFVGQFDNLK-EAVMSATYTHSFIGENLAKDMYVVPPSRLINEIPYAMKQLES
3BGK Chain:A ((35-308))
---MIIDDLLTKKIIKPRPLNSHKGTFGRVLLIGGNYPYGGAIIMAALACVNSGAGLVTVATHKDNITALHSHLPEAMAFDMVEKDRLSEQITAADVVLMGPGLAEDDLAQTTFDVVWQAIEPKQTLIIDGSAINLLAKRK-AIWPTKQIILTPHQKEWERLSGLTIPEQIEAATQTALAHFPKETILVAKSHQTKIYQGQKIGHIQVGGPYQATGGMGDTLAGMIAGFVAQFHTDRFEVAAAAVFLHSYIADQLSKEAYVVLPTRISAEITRVMKE---
General information:
TITO was launched using:
RESULT:
Template:
3BGK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173124 for 2381 contacts (-72.7/contact) +
2D Compatibility (PS) -29024 + (NN) -12241 + (LL) -24
1D Compatibility (HY) -20000 + (ID) 5850
Total energy: -240263.0 ( -100.91 by residue)
QMean score : 0.621
(partial model without unconserved sides chains):
PDB file :
Tito_3BGK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BGK-query.scw
PDB file :
Tito_Scwrl_3BGK.pdb
: