Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVLKWVSSYNNERDAWFVLYPPSKASSCFTLIVDVALFSE
2Y2M Chain:A ((360-372))
-----------QDENMWLMLSTPR-----------------
General information:
TITO was launched using:
RESULT:
Template:
2Y2M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 0 for 25 contacts (0.0/contact) +
2D Compatibility (PS) -1473 + (NN) -1360 + (LL) 2524
1D Compatibility (HY) -1200 + (ID) 150
Total energy: -1659.0 ( -66.36 by residue)
QMean score : 0.100
(partial model without unconserved sides chains):
PDB file :
Tito_2Y2M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y2M-query.scw
PDB file :
Tito_Scwrl_2Y2M.pdb
: