Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFNKYYTKEEVVISTLQTLASKFEDLDIDSHDN--LNSFKARIGSTIDKLAKAPPLNKYTFTELMIIISIIYFKNLYIGRLDKPSSRKKKGGNLIFEIVYNNQMLNSSTAKL |
1VCY Chain:A ((70-100)) | -----------------------EDLSFDKYDQSTINQREQEVGSMVDKIAK------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VCY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -575 for 80 contacts (-7.2/contact) +
2D Compatibility (PS) -2575 + (NN) 1832 + (LL) 6304
1D Compatibility (HY) -2000 + (ID) 600
Total energy: 2386.0 ( 29.83 by residue)
QMean score : 0.533
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