Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFFKQFYDNHLSQASYLVGCQRTGEAIIIDPV-----RDLSKYIEVADSEGLTITQATETHIHADFASGIRDVAKRLNANIYVSGEGEDALGYKNMPSKTQFVKHGDIIQVGNVKLEVLHTPGHTPESISFLLTDLGGGSSVPMGLFSGDFIFVGDIGRPDLLEKSVQIKGSTEISAKQMYESVQNIK-NLPDYVQIWPGHGAGSPCGKALGAIPISTIGYEKINNWAFNEIDETKFIESLTSNQPAPPHHFAQMKQVNQFGMNLYQSYDVYPSLDNKRVAFDLRSKEAFHGGHTKGTINIPYNKNFINQIGWYLDFEKDIDLIGDKSTVEKAKHTLQLIGFDKVAGYRLPKSGISTQSVHSADMTGKEEHVLDVRNDEEWNNGHLDQAVNIPHGKLLNENIPFNKEDKIYVHCQSGVRSSIAVGILESKGFENVVNIREGYQDFPESLK |
| 4YSB Chain:A ((1-170)) | MIFRQLFDSESSTYTYLIGDEATRQAVLIDPVLEQVDRDLQMVAEL----DLTLTHVFDTHVHADHITASGALRERTQATVVGSVNGASCANVQ--------VRHGDEVRVGQLVFQVLATPGHTDDSISYLLGD---------RVFTGDALLVRGNGRTDFQNG----------NASQLYDSLTRVLFTLPDETLVYPGH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YSB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -92145 for 1368 contacts (-67.4/contact) +
2D Compatibility (PS) -17991 + (NN) -6820 + (LL) 13628
1D Compatibility (HY) -12800 + (ID) 3300
Total energy: -119428.0 ( -87.30 by residue)
QMean score : 0.467
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