Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNDMLISLVIPVFALLVIGGIIWVIIEGIVHISKKNKAIDNFLNQVNKVSETYKFATAFLFLILATAGISQFYLYYIVSAFLFWLVILTFGIAG-IIFLMPYGLCFLPLYKQKKKKQTFKKYMVYTTIGLSICLGLSLVLVHTTKIYMDEGGVRYYYGSFVMKQAGGYAYLALAVLSTLLIVAKKATNKNKEIETVDNTNITER |
2L8S Chain:A ((9-43)) | ----------------------------------------------------------------------------------LWVILLSAFAGLLLLMLLILALWKIGFFKRPLKKK--------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2L8S.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -10326 for 130 contacts (-79.4/contact) +
2D Compatibility (PS) -3309 + (NN) -463 + (LL) 15356
1D Compatibility (HY) -5600 + (ID) 350
Total energy: -4692.0 ( -36.09 by residue)
QMean score : 0.385
|
|
|