Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTE-LEHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEK--GGVIDDIKAQWGTLDEFKNEFANKATTLFGSGWTWLVVNDGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQAAK
1JR9 Chain:A ((3-201))
--FELPELPYAYDALEPTIDKETMNIHHTKHHNTYVTKLNGALEGHEDLKNKSLNDLISNLDAVPENIRTAVRNNGGGHANHSLFWKLMSPNGGGKPTGEVADKINDKYGSFEKFQEEFAAAAAGRFGSGWAWLVVNNGEIEIMSTPIQDNPLMEGKKPILGLDVWEHAYYLKYQNKRPDYISAFWNVVNWDEVAAQYSQA-
General information:
TITO was launched using:
RESULT:
Template:
1JR9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78299 for 1546 contacts (-50.6/contact) +
2D Compatibility (PS) -19818 + (NN) 1438 + (LL) 416
1D Compatibility (HY) -21200 + (ID) 6350
Total energy: -123813.0 ( -80.09 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_1JR9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JR9-query.scw
PDB file :
Tito_Scwrl_1JR9.pdb
: