Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYAPHTAENVVQNANKLI-DVFRK--NNGFIAFVRVNFYDGKDVLQPNAMISLPP-----KEGDD-YSRFHHLLDKRDDD---FVIDKRHFSAFVGTDLDLQLRRRGIDTIVLGGVATHIGVDTTARDAYQLNYNQFFVTDMMSAQNETLHQFPIDNVFPLMGQTITTNDFLNILN
3S2S Chain:A ((56-215))
------TAGKPAQAISKAIAQVTQKAYDNGDYIFFTIDGHDEGDDFHPETKL-FPPHNIKGTSGRDLYGALADFYQKHENDKRVFWMDKRHYSAFSGTDLDIRLRERRVDTVVLTGVLTDICVLHTAIDAYNLGYQIEVVQSAVASLSQENHQFALNHLQNVLGATI----------
General information:
TITO was launched using:
RESULT:
Template:
3S2S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73860 for 1020 contacts (-72.4/contact) +
2D Compatibility (PS) -15622 + (NN) -6812 + (LL) 720
1D Compatibility (HY) -10400 + (ID) 2950
Total energy: -108924.0 ( -106.79 by residue)
QMean score : 0.344
(partial model without unconserved sides chains):
PDB file :
Tito_3S2S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S2S-query.scw
PDB file :
Tito_Scwrl_3S2S.pdb
: