Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVLITYQIILFFIISLSYYLTLNHYMAVTVGNFTSIFGMFAAILFMYYYLLYKSPEYNQRKRFKHFIHITNLIIIAFSTFVLVHLALKLFFSI
1RKL Chain:A ((4-35))
--------------------------DEQLNSLAITFGIVMMTLIVIYHAVDSTMSPK-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1RKL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9048 for 126 contacts (-71.8/contact) +
2D Compatibility (PS) -3171 + (NN) 856 + (LL) 7452
1D Compatibility (HY) -1600 + (ID) 200
Total energy: -5711.0 ( -45.33 by residue)
QMean score : -0.159
(partial model without unconserved sides chains):
PDB file :
Tito_1RKL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RKL-query.scw
PDB file :
Tito_Scwrl_1RKL.pdb
: