Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLHKKIAWTGIKGSAITTFITALYNGSSVWNALAVAGIAFGGGAGTAVAALGRATVMRFIKRWGVRKTAAW
1Q90 Chain:M ((4-25))
----------------------EFIAGTALTMVGMTLVGLAIGF-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1Q90.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -411 for 78 contacts (-5.3/contact) +
2D Compatibility (PS) -2372 + (NN) -425 + (LL) 4648
1D Compatibility (HY) -1600 + (ID) 150
Total energy: -310.0 ( -3.97 by residue)
QMean score : -0.244
(partial model without unconserved sides chains):
PDB file :
Tito_1Q90.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q90-query.scw
PDB file :
Tito_Scwrl_1Q90.pdb
: