Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKNDLLVMSVVYILTSVIMFYINGLSKQFFTYVVGFPIIYFGYICLVNLIKKRSRNN
3ZDQ Chain:A ((152-162))
--------------VGISMMFFVSP---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3ZDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3100 for 36 contacts (-86.1/contact) +
2D Compatibility (PS) -1096 + (NN) 367 + (LL) 4148
1D Compatibility (HY) -2000 + (ID) 100
Total energy: -1781.0 ( -49.47 by residue)
QMean score : -0.069
(partial model without unconserved sides chains):
PDB file :
Tito_3ZDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZDQ-query.scw
PDB file :
Tito_Scwrl_3ZDQ.pdb
: