Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKYEHIAKQLNAFIHQSNFKPGDKLPNVTQLKERYQVSKSTIIKALGLLEQDGLIYQAQGSGIYVRNIADANRINVFKTNGFSKSLGEHRMT-SKVLVFKEMATPPKSVQDELQLNADDTVYYLERLRFVDDDVLCIEYSYYHKEIVKYLNDDIAKGSIFDYLESNMKLRIGFSDIFFNVDKLTSSEASLLQLSTGEPCLRYHQTFYTMTGKPFDSSDIVFHYRHAQFYIPSKK
4U0V Chain:A ((15-231))
---YYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVSKPKMEQALQGLTS--FTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIHKITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSAATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVY-------------
General information:
TITO was launched using:
RESULT:
Template:
4U0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108650 for 1511 contacts (-71.9/contact) +
2D Compatibility (PS) -22692 + (NN) -1630 + (LL) 1128
1D Compatibility (HY) -9600 + (ID) 2550
Total energy: -143994.0 ( -95.30 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_4U0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U0V-query.scw
PDB file :
Tito_Scwrl_4U0V.pdb
: