Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MWSFKSMFNTPEDPEKDAYEFYGKVQPGITTPTQKTCNFVALDLKSKDRDAIKAMFKKWTVMADRMMDGDTVGKTSNNPLMPPVDTGESIG-LGASKLTITFGISKSLM-KKIGLSSKIPDAFKDLPHFPNDQLIDDYSDGDIMIQACSNDSQVSFHAVHNLVRPFRDIVKVRWAQSGFIS-----AKGKETPRNLMAFKDGTINPRKSNQ--LKDYVFI-----DDGWAKHGTYCVVRRIQIHIETWDRTALEEQEATFGRKRHSGAPLTGGKEFDEIDLKAKDSHGEYIIDKDAHTRLAK-EANTSI-LRRAFNYVDGTDDRTGNFETGLLFIAFQK-ATKQFIDIQNNLGSNDKLNEYITHRGSASFLVLPGVSKGG-YLGETLFD |
| 2Y4D Chain:A ((28-401)) | ------------DARNEKQPFYGEHQAGILTPQQAAMMLVAFDVLASDKADLERLFRLLTQRFAFLTQGGAAPETPN-PRLPPLDSGILGGYIAPDNLTITLSVGHSLFDERFGLAPQMPKKLQKMTRFPNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSKGKETPINLLGFKDGTANPDSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFRVEFWDRTPLKEQQTIFGRDKQTGAPLGMQHEHDVPDY-ASDPEGK-VIALDSHIRLANP-SESSLMLRRGYSYSLGVTN-SGQLDMGLLFVCYQHDLEKGFLTVQKRL-NGEALEEYVKPIGGGYFFALPGVKDANDYFGSALL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y4D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -110011 for 2881 contacts (-38.2/contact) +
2D Compatibility (PS) -37594 + (NN) -15749 + (LL) 812
1D Compatibility (HY) -29200 + (ID) 6650
Total energy: -198392.0 ( -68.86 by residue)
QMean score : 0.462
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