Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRANKKSTN
2NX8 Chain:A ((18-165))
-----YFMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRERKK---
General information:
TITO was launched using:
RESULT:
Template:
2NX8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110678 for 1294 contacts (-85.5/contact) +
2D Compatibility (PS) -16352 + (NN) -10809 + (LL) 252
1D Compatibility (HY) -12000 + (ID) 3450
Total energy: -153037.0 ( -118.27 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_2NX8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NX8-query.scw
PDB file :
Tito_Scwrl_2NX8.pdb
: