Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLNLGSKKQASFYVACELYKEMAFNQHCKLGLATGGTMTDLYEQLVKLLNKNQLNVDNVSTFNLDEYVGLTASHPQSYHYYMDDMLFKQYPYFNRKNIHIPNGDADDMNAEASKYNDVLEQQGQRDIQILGIGENGHIGFNEPGTPFDSVTHIVDLTESTIKANSRYFKNEDDVPKQAISMGLANILQAKRIILLAFGEKKRAAITHLLNQEISVDVPATLLHKHPNVEIYLDDEACPKNVAKIHVDEMD
2RI0 Chain:A ((2-230))
MKTIKVKNKTEGSKVAFRMLEEEITFGAKT-LGLATGSTPLELYKEI----RESHLDFSDMVSINLDEYVGLSADDKQSYAYFMKQNLFAAKPF---KKSYLPNGLAADLAKETEYYDQILAQY-PIDLQILGIGRNAHIGFNEPGTAFSSQTHLVDLTPSTIAANSRFFEKAEDVPKQAISMGLASIMSAKMILLMAFGEEKAEAVAAMVKGPVTEEIPASILQTHPKVILIVDEKA--------------
General information:
TITO was launched using:
RESULT:
Template:
2RI0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136786 for 1922 contacts (-71.2/contact) +
2D Compatibility (PS) -24797 + (NN) -13439 + (LL) 1552
1D Compatibility (HY) -22000 + (ID) 5400
Total energy: -200870.0 ( -104.51 by residue)
QMean score : 0.616
(partial model without unconserved sides chains):
PDB file :
Tito_2RI0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RI0-query.scw
PDB file :
Tito_Scwrl_2RI0.pdb
: