Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKFSDYQLILDELKMTLSHVEADEFSTFASKILHAEHIFVAGKGRSGFVANSFAMRLNQLGKQAHVVGESTTPAIKSNDVFVIISGSGSTEHLRLLADKAKSVGADIVLITTNKDSAIGNLAGTNIVLPAGTKYDEQ---GSAQPLGSLFEQASQLFLDSVVMGLMTEMNVTEQTMQQNHANLE
1VIM Chain:A ((19-196))
-------EVVSEHIKNLRNHIDLETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKMKQERDEILSQLAPLGTMFELTAMIFLDALVAEIMMQKHLTEKDLEARHAVLE
General information:
TITO was launched using:
RESULT:
Template:
1VIM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94839 for 1388 contacts (-68.3/contact) +
2D Compatibility (PS) -19272 + (NN) -12829 + (LL) 536
1D Compatibility (HY) -14800 + (ID) 3150
Total energy: -144354.0 ( -104.00 by residue)
QMean score : 0.723
(partial model without unconserved sides chains):
PDB file :
Tito_1VIM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VIM-query.scw
PDB file :
Tito_Scwrl_1VIM.pdb
: