Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG------------EVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKKKSKAEQKEFRNKLDEARFVIK
4RVC Chain:A ((19-221))
---------------------------------------LEDVTFVVDRGEMVALIGLNGAGKSTTIKHIIGLMEPRRGAISINGYRLADGPETYRRQFAYIPETPVLYEELTLEEHLRLAAMAYGLSEAEYERRLPPLLREFRLERRLSSFPAHFSKGMKQKVMIVCAFLLEPPLYIIDEPFLGLDPLAIHALLERMNEQKAKGAGILLSTHILATAERYCDSFVILHNGRVKAKGTLDDI----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4RVC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107298 for 1433 contacts (-74.9/contact) +
2D Compatibility (PS) -20998 + (NN) -7668 + (LL) 5772
1D Compatibility (HY) -13200 + (ID) 2400
Total energy: -145792.0 ( -101.74 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_4RVC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RVC-query.scw
PDB file :
Tito_Scwrl_4RVC.pdb
: