Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
4EMM Chain:V ((4-193))
---IPTVIE-------AYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPL-----------IAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE--
General information:
TITO was launched using:
RESULT:
Template:
4EMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124177 for 1325 contacts (-93.7/contact) +
2D Compatibility (PS) -18325 + (NN) -5269 + (LL) 1052
1D Compatibility (HY) -24800 + (ID) 8600
Total energy: -180119.0 ( -135.94 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_4EMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EMM-query.scw
PDB file :
Tito_Scwrl_4EMM.pdb
: