Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNS-QSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLL-PYNVFFVPARGGLGENV-VFQANTIAASMAQQAGGYYTTMYVPDNVS-ETTYNTLLLEPSVINTLDKIKQANVILHGIGDALKM---AHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVH---KVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE |
| 2GNP Chain:A ((8-261)) | --------------------------------------------------------------------------------------------NMFKLENYVKEKYSLESLEIIPNEFDDTPTILSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSKSVRNVHFYPLAGGPSHIHAKYHVNTLIYEMSRKFHGECTFMNATIVQENKLLADGILQSRYFENLKNSWKDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTVGEICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANL-VNHLITDKNTILKVLE |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2GNP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -139742 for 2013 contacts (-69.4/contact) +
2D Compatibility (PS) -26451 + (NN) -11854 + (LL) 7500
1D Compatibility (HY) -9600 + (ID) 2850
Total energy: -182997.0 ( -90.91 by residue)
QMean score : 0.499
|
|
|