Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
1SNO Chain:A ((6-141))
------------------------------------------------------------------------------------KLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWS--------
General information:
TITO was launched using:
RESULT:
Template:
1SNO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43846 for 1086 contacts (-40.4/contact) +
2D Compatibility (PS) -14525 + (NN) -3541 + (LL) 5904
1D Compatibility (HY) -16400 + (ID) 6750
Total energy: -79158.0 ( -72.89 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_1SNO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SNO-query.scw
PDB file :
Tito_Scwrl_1SNO.pdb
: