Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
3GKX Chain:A ((5-115))
---FLQYPACSTCQKAKKWLIENNIEYTNRLIVDDNPTVEELKAWIPLSGLPVKKFFNTSGVVYKELKLSSKLPTMTEEEQIALLATNGKLVKRPLVVTERFVLVGFKPEEWEK----
General information:
TITO was launched using:
RESULT:
Template:
3GKX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19518 for 752 contacts (-26.0/contact) +
2D Compatibility (PS) -11571 + (NN) 187 + (LL) 964
1D Compatibility (HY) -6800 + (ID) 1750
Total energy: -38488.0 ( -51.18 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_3GKX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GKX-query.scw
PDB file :
Tito_Scwrl_3GKX.pdb
: