Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNLVLLGGGYGNMRIMSRILTTSLPQDYTVTLVDRMPFHGLKPEFYALAAGTKSDKDVR---MKFPNHPQVNTVY--GEINDIDLDAQIVSVGN---------------------SKIDYDELIIGLGCEDKYHNVPGAEEYTHSIQTLSKA---RDTFHSISE----LPEG-------AKVGIVGAGLSGIELASELRES------------RSDLEIYLYDRGPRILRNFPEKLSKYVAKWFAKNNVTVVPNSNINKVEPGKIYNCDEPKDIDL---------VVWTAG--IQPV--EVVRNLPIDINSNGRVIVNQYHQVPTYRNVYVVGDCADLPHAPSAQLAEVQGDQIADVLKKQWLNEPLPDKMPELKVQGIVGSLGDKQGFAYIMDRTVTGRLASILKSGVLWLYKYHNG |
4G6H Chain:A ((44-398)) | --NVLILGSGWGAISFLKHIDT----KKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFDK---------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4G6H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -192317 for 2261 contacts (-85.1/contact) +
2D Compatibility (PS) -31877 + (NN) -19181 + (LL) 3684
1D Compatibility (HY) -16800 + (ID) 4000
Total energy: -260491.0 ( -115.21 by residue)
QMean score : 0.518
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