Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFITVTLALGMIATTGATVTSNEVSAAEKDKLPATQKAKEMQNVPYTIAVDGIMAFNQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPEKIRNAKSAVYTITWKDGSKKEVDLKKDSYTANLFDSNSIKQIDINVKTK
4NZL Chain:B ((20-114))
-----------------------------------------------VPYTISVDGITALHRTYFVF--NKKVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKNDDAKNSIDPSTIKQIQIVVK--
General information:
TITO was launched using:
RESULT:
Template:
4NZL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42031 for 616 contacts (-68.2/contact) +
2D Compatibility (PS) -9792 + (NN) 24 + (LL) 3988
1D Compatibility (HY) -7600 + (ID) 2300
Total energy: -57711.0 ( -93.69 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_4NZL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NZL-query.scw
PDB file :
Tito_Scwrl_4NZL.pdb
: