Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTTPYDIIGKEALYD-MIDYFYTLVEKDERLNHLFP-GDFAETSRKQKQFLTQFLGGPNIYTEEHGHPMLRKRHMDFTITEFERDAWLENMQTAINRAAFPQGVGD-----YLFERLRLTANHMVNS
1NGK Chain:A ((3-126))
--KSFYDAVGGAKTFDAIVSRFYAQVAEDEVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGHPRLRMRHAPFRISLIERDAWLRCMHTAV--ASIDSETLDDEHRRELLDYLEMAAHSLVNS
General information:
TITO was launched using:
RESULT:
Template:
1NGK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48038 for 783 contacts (-61.4/contact) +
2D Compatibility (PS) -12951 + (NN) -10817 + (LL) 280
1D Compatibility (HY) -9200 + (ID) 2350
Total energy: -83076.0 ( -106.10 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_1NGK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NGK-query.scw
PDB file :
Tito_Scwrl_1NGK.pdb
: