Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKTYEKIANINGMFNMLEQQIIHSQDMAHFRSEFFYVNHEHRENYEALLI-----YYKNSIDNPIVDGACYILAL--PEIFNSVDVFESELPFSWVYDENGITETMKSLSIPLQYLVAAALEVTDVNIFKPSGFTMGMNNWNIAQMRIFWQYTAIIRKEAL
3RNV Chain:A ((353-402))
-----------------------------------LVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVATACYFLKVFYPDVANA------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RNV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18591 for 194 contacts (-95.8/contact) +
2D Compatibility (PS) -4498 + (NN) 128 + (LL) 9704
1D Compatibility (HY) -3200 + (ID) 400
Total energy: -16857.0 ( -86.89 by residue)
QMean score : 0.287
(partial model without unconserved sides chains):
PDB file :
Tito_3RNV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RNV-query.scw
PDB file :
Tito_Scwrl_3RNV.pdb
: