Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQNAFCIDRAKKHDIPVYINEPKQFDSKAAYEQHLVTLLNKDKVEWIILAGYMRLIGPDLLASFEGKILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDCGMDTGEIIEQRQCDIRPDDSKEQLEEKVKKLEYELYPSVIAKIVK
4S1N Chain:A ((6-178))
--KIAVFASGNGSNFQVIAE--------EFPVEFVFSDHRDAYVLERAKQLGVLSYAFELKEFESKADYEAALVELLEEHQIDLVCLAGYMKIVGPTLLSAYEGRIVNIHPAYLPEFPGAHGIEDAWNAGVGQSGVTIHWVDSGVDTGQVIKQVRVPRLADDTIDRFEARIHEAEYRLYPEVV-----
General information:
TITO was launched using:
RESULT:
Template:
4S1N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118544 for 1351 contacts (-87.7/contact) +
2D Compatibility (PS) -18933 + (NN) -12142 + (LL) 1552
1D Compatibility (HY) -18400 + (ID) 3750
Total energy: -170217.0 ( -125.99 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_4S1N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4S1N-query.scw
PDB file :
Tito_Scwrl_4S1N.pdb
: