Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRMKRFLTIVQILLVVIIIIFGYKIVQTYIEDKQERANYEKLQQKFQMLMSKHQEHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDKIMTLSTCEDAYSETTKRIVVVAKIIKVS
1QWZ Chain:A ((21-235))
-----------------------------MEDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKIIKVS
General information:
TITO was launched using:
RESULT:
Template:
1QWZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83194 for 1666 contacts (-49.9/contact) +
2D Compatibility (PS) -22906 + (NN) -5884 + (LL) 4088
1D Compatibility (HY) -29600 + (ID) 10600
Total energy: -148096.0 ( -88.89 by residue)
QMean score : 0.814
(partial model without unconserved sides chains):
PDB file :
Tito_1QWZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QWZ-query.scw
PDB file :
Tito_Scwrl_1QWZ.pdb
: