Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNKLIAKSLLTIAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVR
3D5S Chain:C ((11-75))
----------------------------------------------------------------------------------------------------TDATIKKEQKLIQAQNLVREFEKTHTVSAHAKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVR
General information:
TITO was launched using:
RESULT:
Template:
3D5S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1263 for 410 contacts (-3.1/contact) +
2D Compatibility (PS) -7163 + (NN) -4565 + (LL) 5172
1D Compatibility (HY) -8400 + (ID) 3200
Total energy: -19419.0 ( -47.36 by residue)
QMean score : 0.648
(partial model without unconserved sides chains):
PDB file :
Tito_3D5S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D5S-query.scw
PDB file :
Tito_Scwrl_3D5S.pdb
: