Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGGMYM
2UVD Chain:A ((5-246))
----KVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDENIKAEMLKLIPAAQFGEAQDIANAVTFFASDQSKYITGQTLNVDGGMVM
General information:
TITO was launched using:
RESULT:
Template:
2UVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113120 for 2152 contacts (-52.6/contact) +
2D Compatibility (PS) -25915 + (NN) -4664 + (LL) 532
1D Compatibility (HY) -26000 + (ID) 7750
Total energy: -176917.0 ( -82.21 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_2UVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UVD-query.scw
PDB file :
Tito_Scwrl_2UVD.pdb
: