Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKKIPMRKCILSNEMHPKKDMIRVVVNKEGEIFADVTGKKQGRGAYVSKDVAMVEKAQQKEILEKYFKASKEQLDPVYKEIIRLIYREEIPK
4DIK Chain:A ((112-155))
--------------------------TIGHDVEIIASNFGKRLLEGFYGIKDVTVVKDGEEREIGGKKFK------------------------
General information:
TITO was launched using:
RESULT:
Template:
4DIK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3313 for 203 contacts (16.3/contact) +
2D Compatibility (PS) -4193 + (NN) 3890 + (LL) 4432
1D Compatibility (HY) -1600 + (ID) 800
Total energy: 5042.0 ( 24.84 by residue)
QMean score : 0.145
(partial model without unconserved sides chains):
PDB file :
Tito_4DIK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DIK-query.scw
PDB file :
Tito_Scwrl_4DIK.pdb
: