Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEIETIISEIEKLLTNNTPYSISKNSGVPRQTVTDLKVGKTKIKEAKFKTIIKLYEYQRTLENKTEC
1QMD Chain:A ((19-53))
-------VSILENDLSKNEPESVRKNLEILKENMHELQLGST--------------------------
General information:
TITO was launched using:
RESULT:
Template:
1QMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165 for 152 contacts (-1.1/contact) +
2D Compatibility (PS) -3499 + (NN) 1593 + (LL) 3372
1D Compatibility (HY) -2400 + (ID) 550
Total energy: -1649.0 ( -10.85 by residue)
QMean score : 0.351
(partial model without unconserved sides chains):
PDB file :
Tito_1QMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QMD-query.scw
PDB file :
Tito_Scwrl_1QMD.pdb
: