Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLFIPYI-MGNKDLIENA---TLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITIDYIFNQLEKHGDQIKCNYVLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRLKQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVTMNATTGQNGAFHPELKRKIESIKAIANVPVVAGFGIRTPQHVADIKEV-ADGIVIGSEIVKRF-KSNTREEIIRYLQSIQQTLNN
1TJR Chain:A ((19-258))
----FIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMSRS----LAEMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKN
General information:
TITO was launched using:
RESULT:
Template:
1TJR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -186013 for 1960 contacts (-94.9/contact) +
2D Compatibility (PS) -26104 + (NN) -12250 + (LL) 1000
1D Compatibility (HY) -21200 + (ID) 4200
Total energy: -248767.0 ( -126.92 by residue)
QMean score : 0.734
(partial model without unconserved sides chains):
PDB file :
Tito_1TJR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TJR-query.scw
PDB file :
Tito_Scwrl_1TJR.pdb
: