Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEGQAVEFEVVEGDRGPQAANVVKL
1CSP Chain:A ((1-65))
MLEGKVKWFNSEKGFGFIEVEGQDDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGNRGPQAANVTK-
General information:
TITO was launched using:
RESULT:
Template:
1CSP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28817 for 436 contacts (-66.1/contact) +
2D Compatibility (PS) -6556 + (NN) 2211 + (LL) 176
1D Compatibility (HY) -7600 + (ID) 2500
Total energy: -43086.0 ( -98.82 by residue)
QMean score : 0.727
(partial model without unconserved sides chains):
PDB file :
Tito_1CSP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CSP-query.scw
PDB file :
Tito_Scwrl_1CSP.pdb
: