Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MINEQRLLNTFLELVQIDSE----------TGNESTIQPILKEKFIALGL-DVKEDEAAKHPKLGANNLVCTMNSTIEEGEVPKLYLTSHMDTV--VPAINVKPIVKDD-----------------------------GYIYSDGTTILGADDKAGLAAMLEVLQVIKEQQIPHGQIQFVITVGEESGLIGAKELNSELLDADFGYAIDASADVGTTVVGAPTQMLISAKIIGKTAHASTPKE-GVSAINIAAKAISRMKLGQVDEITTANIGKFHGGSATNIVADEVILEAEARSHDPERIKTQVKHMTDVFETTASELGGKA--EVTVEQSYPGF--KINDNEAVVKIAQESARNLGLSANTIISGGGSDGSIINTFGIPSVILGVGYEKIHTTNERMPIKSLNLLASQVLEIIKIVARQSK |
| 1VIX Chain:A ((5-411)) | -----KLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEEMGLINVTLSEKG--------TLMATLPANVP-GDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGDIALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKKIPHGDIRVAFTPDEEVGK-GAKHFDVDAFDARWAYTVDGGG-VGELEFENFNAASVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLASMKGTV-ERADMHYIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILDIAQQAMRDCDIEPELKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEKAVQVIVRIAELTAQRKE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VIX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -167115 for 3083 contacts (-54.2/contact) +
2D Compatibility (PS) -38939 + (NN) -14096 + (LL) 1032
1D Compatibility (HY) -19200 + (ID) 4950
Total energy: -243268.0 ( -78.91 by residue)
QMean score : 0.521
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