Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
3UPS Chain:A ((14-117))
FDPE-LLKLVTDSLDDDQALEIATIPLAGKSSIADY-VIASGRSSRQVTA-AQKLADRIKAATGYVSKIEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLERMW-------------
General information:
TITO was launched using:
RESULT:
Template:
3UPS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 10256 for 733 contacts (14.0/contact) +
2D Compatibility (PS) -10520 + (NN) -2897 + (LL) 1208
1D Compatibility (HY) 800 + (ID) 450
Total energy: -1603.0 ( -2.19 by residue)
QMean score : 0.182
(partial model without unconserved sides chains):
PDB file :
Tito_3UPS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UPS-query.scw
PDB file :
Tito_Scwrl_3UPS.pdb
: