Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFAVIGNPISHSLSPVMHRANFNSLGLDDTYEALNIPIEDFHLIKEIISKKELDGFNITIPHKERIIPYLDYVDEQAINAGAVNTVLIKDGKWIGYNTDGIGYVKGL-HSVYPDLENAYILILGAGGASKGIAYELAKFVKPKLTVANRTMARFESWNLNINQ-----ISLADAEKYLAEFDIVINTTPAGMAGNNE-SIINLKHLSPNTLMSDIVYIPYKTPILEEAERKGNHIYNGLDMFVYQGAESFKIWTNKDADINSMKTAVLQQLKGE
2EGG Chain:A ((26-296))
--YGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIAGVNVTIPHKLAVIPFLDEVDEHARRIGAVNTIINNDGRLVGYNTDGLGYVQALEEEMNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLETKWLKEAKARGARVQNGVGMLVYQGALAFEKWTGQWPDVNRMKQLVIEALR--
General information:
TITO was launched using:
RESULT:
Template:
2EGG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164024 for 2260 contacts (-72.6/contact) +
2D Compatibility (PS) -28261 + (NN) -10111 + (LL) 204
1D Compatibility (HY) -24000 + (ID) 5400
Total energy: -231592.0 ( -102.47 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_2EGG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EGG-query.scw
PDB file :
Tito_Scwrl_2EGG.pdb
: