Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRKLVVGSRRSKLALTQSQQFINKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLFVKEIQHELFEKNIDMAIHSLKDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEGSIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTEDYDAIILAAAGLRRMGWSDDIVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGSCQVPIAGYATISDQKEIEFTGLIMTPDGKE--RFEYTMNGTDPVELGKTVSNKLKEQGAYEIIKRLNEQH
1PDA Chain:A ((6-303))---LRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVI---------GKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRI-RAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGACQVPIGSYAELID-GEIWLRGLVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREIL-------


General information:
TITO was launched using:
RESULT:

Template: 1PDA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102881 for 2437 contacts (-42.2/contact) +
2D Compatibility (PS) -31676 + (NN) -24068 + (LL) 1744
1D Compatibility (HY) -20000 + (ID) 6700
Total energy: -183581.0 ( -75.33 by residue)
QMean score : 0.603

(partial model without unconserved sides chains):
PDB file : Tito_1PDA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1PDA-query.scw
PDB file : Tito_Scwrl_1PDA.pdb: