Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKVIGLTGGIASGKSTVSELLSVFGFKVVDADKAAREAVKKGSKGLAQVREVFGDEAIDENGEMNRRYMGDLVFNHPEKRLELNAIIHPIVRDIMEEEKQEYLKQGYNVIMDIPLLFENELENTVDEVWVVYTSESIQMDRLMQRNNLSLEDAKARVYSQISIDKKSRMADHVIDNLGDKLELKQNLERLLEEEGYIEKPNYGEED
1VIY Chain:A ((6-191))
---IVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQ--QETQHQIQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARL----------------
General information:
TITO was launched using:
RESULT:
Template:
1VIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43478 for 1366 contacts (-31.8/contact) +
2D Compatibility (PS) -20304 + (NN) -5165 + (LL) 872
1D Compatibility (HY) -10400 + (ID) 3200
Total energy: -81675.0 ( -59.79 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_1VIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VIY-query.scw
PDB file :
Tito_Scwrl_1VIY.pdb
: