Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKNIVIKSMAALAILTSVTGINAAVVEETQQIANAEKNVTQVKDTNNFPYNGVVSFKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDNILNFDAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNG-AVYFTPQIKDFIQKHIEQ
2VID Chain:A ((1-204))
------------------------------------ENNVTKVKDTNIFPYTGVVAFKSATGFVVGKNTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVIQVEERAIERGPKGFNFNDNVTPFKYAAGAKAGERIKVIGYPHPYK--YVLYESTGPVMSVEGSSIVYSAHTESGNSGSPVLNSNNELVGIHFASDV---DNRNAYGVYFTPEIKKFIAENIDK
General information:
TITO was launched using:
RESULT:
Template:
2VID.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57074 for 1686 contacts (-33.9/contact) +
2D Compatibility (PS) -22032 + (NN) -12763 + (LL) 3736
1D Compatibility (HY) -18400 + (ID) 6100
Total energy: -112633.0 ( -66.80 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_2VID.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VID-query.scw
PDB file :
Tito_Scwrl_2VID.pdb
: