Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKSVAIIGAGITGLSSAYFLKQQDPNIDVTIFEASNRPGGKIQSYRKDGYMIELGPESYLGRKTIMTELAKDIGLEQDIVTN--TTGQSYIFAKNKLYPIPGGSIMGIPTDIKPFVTTKLISPLGKLRAGLDLIKKPIQMQDG-DISVGAFFRARLGNEVLENLIEPLMGGIYGTDIDKLSLMSTFPNFKEKEEAFGSLIKG-MKDEKNKRLKQRQLYPG-APK--GQFKQFKHGLSSFIEALEQDVKNKGVTIRYNTSVDDIITSQKQYKIV---YSNQQEDVFDGVLVTTPHQVFLNWFGQDPAFDYFKTMDS----TTVATVVLAFDEKDIENTYDGTGFVIARTSDTDITACTWTSKKWPFTTPEGKVLIRAYVGKPGDTVVDDHTDNELVSIVRRDLSQMMTFKGDPEFTIVNRLPKSMPQYHVGHIQQIRQIQAHIKQTYPRLRVTGASFEAVGLPDCITQGKVAAEEVIAEL |
2IVD Chain:A ((18-471)) | ---NVAVVGGGISGLAVAHHLRSR--GTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGA--------RLRVAGELFSR--RAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQR--Q----AGTAPKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLARE--GWRLIIEEHGRRAELSVAQVVLAAPAHATAKLL--RPLDDALAALVAGIAYAPIAVVHLGFDAGTLPAP-DGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAREELKALAGVTARPSFTRVFRWPLGIPQYNLGHLERVAAIDAAL-QRLPGLHLIGNAYKGVGLNDCIRNAAQLADALVA-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2IVD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -213200 for 3659 contacts (-58.3/contact) +
2D Compatibility (PS) -46878 + (NN) -19158 + (LL) 1848
1D Compatibility (HY) -26800 + (ID) 6300
Total energy: -310488.0 ( -84.86 by residue)
QMean score : 0.519
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